PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41484.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 612aa MW: 64438.2 Da PI: 5.7807

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.4	1.9e-09	204	249	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++WT+eEd+ l+ av++ G g+W+ I r Rt+ q+ rw+ GAY41484.1 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFkWDRTASQLSQRWN 249 789************************9843235677777777775 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MVENTNKKQK KGSISEGDVS SLLQRYTANT VLALLQEVAQ FPDVKLDWNA LVKKTSTGIS 60 NAREYQMLWR HLAYRNTLFD KLEDNAQPLD DDSDLEYELE AFPEVSSEAS TEAAACVKVL 120 IASGLPSDSS LPNSSMVEAP LTINIPNGQS LRASTENSQP SSLMQGMNIT VPVAVQKVPL 180 PAPTPEVLDA NGLIGGSMPP RKKRKPWTAE EDLELISAVQ KCGEGNWANI LRGDFKWDRT 240 ASQLSQRWNI LRKKHGNVIL GSNSSGSQLS EAQLAARHAM SLALDMPVKN ITASCTNTTA 300 GTTSSATMNN PVPSTANAEA SSVANQSKLS PVGSPGSAAK SRVPLKKMPA KSNFGADSSI 360 RAAAVAAGAR IVTPSDAASL LKVAQAKKAI HIMPSGVSSI KSPSAGSASA HLEASPTTRY 420 VRPSLPAVPS SSSPAVTSSA SHPGLVKAAL PKVQHNTSCE QTNAVVSVPA TELQLKPEVK 480 AGEEIKVSGC SVSGNEPSKE IQLDLPKLDA EFKNQAAVAE FENQAAVAEN PDSSSNMEIV 540 ENGQVQSNGN QPEGNGNQNG NDDKMVDSPV ANGENQAAVK QKNSGLPQSS NNEEAELPTL 600 VIDKCSSKNL EV

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MVENTNKKQK KGSISEGDVS SLLQRYTANT VLALLQEVAQ FPDVKLDWNA LVKKTSTGIS  60
NAREYQMLWR HLAYRNTLFD KLEDNAQPLD DDSDLEYELE AFPEVSSEAS TEAAACVKVL  120
IASGLPSDSS LPNSSMVEAP LTINIPNGQS LRASTENSQP SSLMQGMNIT VPVAVQKVPL  180
PAPTPEVLDA NGLIGGSMPP RKKRKPWTAE EDLELISAVQ KCGEGNWANI LRGDFKWDRT  240
ASQLSQRWNI LRKKHGNVIL GSNSSGSQLS EAQLAARHAM SLALDMPVKN ITASCTNTTA  300
GTTSSATMNN PVPSTANAEA SSVANQSKLS PVGSPGSAAK SRVPLKKMPA KSNFGADSSI  360
RAAAVAAGAR IVTPSDAASL LKVAQAKKAI HIMPSGVSSI KSPSAGSASA HLEASPTTRY  420
VRPSLPAVPS SSSPAVTSSA SHPGLVKAAL PKVQHNTSCE QTNAVVSVPA TELQLKPEVK  480
AGEEIKVSGC SVSGNEPSKE IQLDLPKLDA EFKNQAAVAE FENQAAVAEN PDSSSNMEIV  540
ENGQVQSNGN QPEGNGNQNG NDDKMVDSPV ANGENQAAVK QKNSGLPQSS NNEEAELPTL  600
VIDKCSSKNL EV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	206	PRKKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	4e-75	MYB_related family protein