PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41663.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 344aa MW: 38782.4 Da PI: 4.996

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.5e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s GAY41663.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	26.4	2.9e-10	123	191	11	79
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 +++ e+lqqe+ +L++++++ + ++R + + L s+k++++ e++L + l+++ ++K+ ll ++++ GAY41663.1 123 NNDIEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLSNHLSS 191 67889**********************************************************999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEYLL RTLQQLRSEN DIALQLANPA 120 AINNDIEELQ QEVGRLQQQL QMAEDQIRIY EPDPLRITSI KDIESCEKNL VDTLTQVSQR 180 KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV VGWLPGGGHN QAQIFESSAS LNELRDLSTT 240 MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN FATWPQAYVS AGLHSAPLSP SLYPQIQQHG 300 MMGTDTNEIL PREQVEIPIN APHVQADNEG ANYDQNKIPQ VNGQ

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEYLL RTLQQLRSEN DIALQLANPA  120
AINNDIEELQ QEVGRLQQQL QMAEDQIRIY EPDPLRITSI KDIESCEKNL VDTLTQVSQR  180
KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV VGWLPGGGHN QAQIFESSAS LNELRDLSTT  240
MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN FATWPQAYVS AGLHSAPLSP SLYPQIQQHG  300
MMGTDTNEIL PREQVEIPIN APHVQADNEG ANYDQNKIPQ VNGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-131	MIKC_MADS family protein