PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41892.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 374aa MW: 41533.1 Da PI: 6.9748

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.2	3.1e-40	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCevhskap+v v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ GAY41892.1 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 228 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MEIGGNIFIR EDTGNSNNNN SNNLAWENMW ALNNHSRFDL GNSSSLYATA EITSTTHTSE 60 GNAAHALMFP HGQSLYAGDG SNLHPDPHLM CLKLGKRHYF EDATATSIGD RGFSMVKKGK 120 PYYTFASAGG GGVGPSSSSP VLVTSTATVP RCQVEGCHVP LINAKDYHRR HKVCEVHSKA 180 PKVKVLGLEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSHES LSRNSSQGRA 240 LSLLSSKAES WVSSSDLSSR CSAALRELIA ENRAAIVARH LILDGRDWHL HLANDGETQM 300 VCSTSMTSSH QYQMLTEQHN WGRYQQTNTH VTLDLMQAPT EDLGFLSVRG ETKDEEEEEE 360 CSEIWSSLEG DHLV

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MEIGGNIFIR EDTGNSNNNN SNNLAWENMW ALNNHSRFDL GNSSSLYATA EITSTTHTSE  60
GNAAHALMFP HGQSLYAGDG SNLHPDPHLM CLKLGKRHYF EDATATSIGD RGFSMVKKGK  120
PYYTFASAGG GGVGPSSSSP VLVTSTATVP RCQVEGCHVP LINAKDYHRR HKVCEVHSKA  180
PKVKVLGLEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSHES LSRNSSQGRA  240
LSLLSSKAES WVSSSDLSSR CSAALRELIA ENRAAIVARH LILDGRDWHL HLANDGETQM  300
VCSTSMTSSH QYQMLTEQHN WGRYQQTNTH VTLDLMQAPT EDLGFLSVRG ETKDEEEEEE  360
CSEIWSSLEG DHLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	7e-36	SBP family protein