PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY41924.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 702aa    MW: 77084.6 Da    PI: 5.4861
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY41924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.82.1e-1003457013374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++++++ e +++g+   aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   +      ++ + s ++ + +++a+k fse+sPil+f+++t+Nqa
  GAY41924.1 345 DQIFKASELIETGNPVHAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHM--NMN---NSSLALSGYSIIFKISAYKSFSEISPILQFANFTCNQA 438
                 78999**********************************************98..222...23344444569*************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198
                 +lea+eg++r+HiiDfdi++G+QW++L+q+L  R+egppsl+iT+++sp+++++ el+ t+e+L++fA+e+++pfe ++l   +le+l+  +L++    
  GAY41924.1 439 LLEAFEGCNRIHIIDFDIGYGGQWASLMQELVLRSEGPPSLKITAFASPSTHDELELSFTRENLKHFASEINMPFELEIL---SLEALNSASLALPLrg 534
                 *******************************************************************************9...6667766666555444 PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                    Ea+aVnl +   ++ + +++ +s    vL +vk+l+Pk+vv  ++ +d+++ +F +++++al+ ys l++sl+a    + ++ +k+Er+l+ + i+
  GAY41924.1 535 leSEATAVNLPIG--TFCNYPATFPS----VLCFVKQLKPKIVVSLDRGCDRTDVPFPHHMIHALQSYSCLLESLDAV-NVNLDALQKIERFLVYPCIE 626
                 55*********95..55555777777....*********************************************665.3566999************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++v  ++ +     e+l  W++ ++++GF p+++s+++++qa++l+++++++g++ve+++ sl l+W++++L+ ++aWr
  GAY41924.1 627 KIVLGRHHS----PERLPPWKSLFMQSGFAPLTFSNFTESQADCLVQRTPVKGFHVEKRQSSLALCWQRKELILATAWR 701
                 ****99988....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    
MPLAFEDFQG KGALDFSSSP SDSVLLLRQQ LKPKPKQNWL LNNPNRGGNT TEPTSVLDNR  60
TSPSTPASSS TLSSSLVGGG GGGSSTTDTT GVAAANVSSN PPSVEINTAE KCGGLGMEDW  120
ESVLSGSPNQ EQSILRLIMG DIDDPSLGIN KILPQDMEFN AGFGVVDQAN FGFETSFTCT  180
NSLLGSNIDP DFVGNNARLG SVSNQSHIFS TAAAANLLPP PSVFQQQPVE ALDEKPQILN  240
SQLVINQNQA QYTQNPALFL PLSYAQMQEH QLLSPALPPP KRLNLGPNQK VPFPDSGEQE  300
LFLRRQQLQM LQQQRETMGV TATATKQKLV NDELANQQLQ QAITDQIFKA SELIETGNPV  360
HAQGILARLN HQLSPIGKPF QRAAFYFKEA LQLLLHMNMN NSSLALSGYS IIFKISAYKS  420
FSEISPILQF ANFTCNQALL EAFEGCNRIH IIDFDIGYGG QWASLMQELV LRSEGPPSLK  480
ITAFASPSTH DELELSFTRE NLKHFASEIN MPFELEILSL EALNSASLAL PLRGLESEAT  540
AVNLPIGTFC NYPATFPSVL CFVKQLKPKI VVSLDRGCDR TDVPFPHHMI HALQSYSCLL  600
ESLDAVNVNL DALQKIERFL VYPCIEKIVL GRHHSPERLP PWKSLFMQSG FAPLTFSNFT  660
ESQADCLVQR TPVKGFHVEK RQSSLALCWQ RKELILATAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-147GRAS family protein