PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY41936.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family YABBY
Protein Properties Length: 218aa    MW: 24112.7 Da    PI: 8.1628
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY41936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY247.23.1e-76121792170
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvss 98 
                 d+ ssseq+Cyv+C+fC+t+lavsvP tslfk+vtvrCGhCt+llsvn++      a + hl++ +  +  llee ++     ++ +++  ++ +++s+
  GAY41936.1  12 DHLSSSEQLCYVHCTFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHPFFTPqnLLEEIRNVPA--NMLMINPPNP-ADQSV 107
                 7899******************************************98888777777777777777655224444444443..3444443333.44455 PP

       YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 + +   +++e+p+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  GAY41936.1 108 MPVRVVDHQEIPKSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 179
                 567889999*************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MSSSTPAALS PDHLSSSEQL CYVHCTFCDT VLAVSVPCTS LFKTVTVRCG HCTNLLSVNM  60
RGLLLPAANQ LHLGHPFFTP QNLLEEIRNV PANMLMINPP NPADQSVMPV RVVDHQEIPK  120
SPVVNRPPEK RQRVPSAYNR FIKDEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIHFGLM  180
PSDQPVKKTS VRQQQEGEDA MIKDGFFAPA ANVGVTPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-100YABBY family protein