PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42009.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 207aa    MW: 22500.5 Da    PI: 6.885
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.85.9e-41111111100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +kll+++p+++r da+ sl+yeA ar+rdP+yG+vg+i +lqqq+ +l+aela ++
  GAY42009.1  11 PCGACKFLRRKCVKGCVFAPYFDADQgTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVVNLQAELAFTQ 109
                 7*************************88********************************************************************998 PP

      DUF260  99 ee 100
                 ++
  GAY42009.1 110 AR 111
                 75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MMMSANNGGG PCGACKFLRR KCVKGCVFAP YFDADQGTTH FAAVHKVFGA SNASKLLSRI  60
PPHKRLDAVV SLCYEAMART RDPIYGCVGH IVALQQQVVN LQAELAFTQA RLSILQRLPM  120
ASAAQDQSTS PCSLYSSSEM VSTADMASGY NISMQFDPLQ QQQTSTDQTS SFNPFDQEID  180
DGDLQALARE FVSKYLPGVK LQPSNSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.14e-58LBD family protein