PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42010.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 202aa MW: 21815.1 Da PI: 9.5779

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.1	4.9e-27	23	99	24	100
DUF260 24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++++++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+++ GAY42010.1 23 SKRAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 99 56799*******************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MFASRKQLNG GSLLSRVALK TSSKRAAHFA AVHKVFGASN VSKLLLHIPV HKRLDAVVTI 60 CYEAQARLRD PVYGCVAHIF ALQQQVVNLQ AELSYLQAHL ATLELPSPPP PPPSQNQMTA 120 PPLSISDLPS ASSMPATYDL STLFDPMVQP APWAMQQRQM DPRQFGGGDL QAMARELLHR 180 QGSPPPGSMP CTDASSSPSL SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	7e-70	LBD family protein