PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42054.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 220aa MW: 25188.7 Da PI: 9.8033

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.7	1.8e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++gkl e++s GAY42054.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 59 8***********************************************86 PP
2	K-box	80.9	2.9e-27	78	171	5	98
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ +e+++++l++e+a++ k+ie L+ ++R+llGe+L s++l+eLqq+e+qLeks+++iR++Kn+++ eqi +l++k k l+ en++L++k GAY42054.1 78 NKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC 171 3344899***********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVAVIIFSP RGKLSEFASS 60 SMQETIERYL KHTKDTRNKQ QPTEQNMQHL KHEAANMVKK IELLEVSKRK LLGEGLASCT 120 LEELQQIERQ LEKSVSNIRA RKNQVFNEQI AQLKEKGKVL EAENTRLEEK CGMENWQGSK 180 EQPENLTNDD GASTSDVETE LFIGPPPERR ARRLAIPPQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-85	MIKC_MADS family protein