PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42100.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 871aa MW: 95217.3 Da PI: 6.3856

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42100.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.5	7.3e-21	134	189	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k GAY42100.1 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189 688999***********************************************999 PP
2	START	48.1	3.2e-16	341	452	1	93
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela++a++elvk+a+ +ep+W +s + +n +e+l++f++ + + +ea+r++g+v+ ++ lve+l+d + +W e+++ + +t++vi GAY42100.1 341 ELALAAMDELVKMAQTDEPLWIRSFegsgrQVLNHEEYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDPN-RWAEMFPcmiaRTATTDVI 438 5899*******************9999999**********9998999************************.*************** PP CTT......EEEEE CS START 86 ssg......galql 93 ssg galql GAY42100.1 439 SSGmggtrnGALQL 452 *98888877775 PP
3	START	133.8	1.9e-42	489	602	94	206
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 m aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + +v +++lpSg+++++++ng+skvtwveh++++++++h+l+++l+ sg+ + GAY42100.1 489 MHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGF 587 889**************************************999************************************************* PP HHHHHHHHTXXXXXX CS START 192 gaktwvatlqrqcek 206 ga++wvatlqrqce+ GAY42100.1 588 GAQRWVATLQRQCEC 602 ***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence
MSFGGFLENN ISTSSGGGGA RIVADISYTN NDNNNNNMPT TTTLAHPRLL SSTPQPLSKS 60 MFNSPGLSLA LQQPNIDNQG GGDLQLQRMG ESFEGIIGRR SREDLLEHES RSGSDNMDGA 120 SGDDLDAADN PPRKKRYHRH TPQQIQELES LFKECPHPDE KQRLELSKRL CLETRQVKFW 180 FQNRRTQMKT QLERHENSLL RQENDKLRAE NMSIRDAMRN PICTNCGGPA IIGDISLEEQ 240 HLRIENARLK DELDRVCALA GKFLGRPVSS MGPPPMPNSS LELGVGTING FGGLSSTVTT 300 TLPADFGTGI SNALPVVMPP NRSGPGVTGL DRSIERSMFL ELALAAMDEL VKMAQTDEPL 360 WIRSFEGSGR QVLNHEEYLR TFTPCIGLKP NGFVTEASRE TGMVIINSLA LVETLMDPNR 420 WAEMFPCMIA RTATTDVISS GMGGTRNGAL QLVEFYNSII NEHLINYFLL IILVHKKNKN 480 KTFFSFLEMH AELQVLSPLV PVREVNFLRF CKQHAEGVWA VVDVSIDTIR ETSGAPAFVN 540 CRRLPSGCVV QDMPNGYSKV TWVEHAEYDE SQVHQLYKPL IISGMGFGAQ RWVATLQRQC 600 ECLAILMSTS VSARDHTAIT AGGRRSMLKL AQRMTDNFCA GVCASTVHKW NKLNAGNVDE 660 DVRVMTRKSV DDPGEPPGIV LSAATSVWLP VSPQRLFNFL RDERLRSEWD ILSNGGPMQE 720 MAHIAKGQDH GNCVSLLRAS AINANQSSML ILQETCTDAA GSLVVYAPVD IPAMHVVMNG 780 GDSAYVALLP SGFAIVPDGP DSRGPLANGP TSGNGSNGGS QRVGGSLLTV AFQILVNSLP 840 TAKLTVESVE TVNNLISCTV QKIKAALQCE S

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence

MSFGGFLENN ISTSSGGGGA RIVADISYTN NDNNNNNMPT TTTLAHPRLL SSTPQPLSKS  60
MFNSPGLSLA LQQPNIDNQG GGDLQLQRMG ESFEGIIGRR SREDLLEHES RSGSDNMDGA  120
SGDDLDAADN PPRKKRYHRH TPQQIQELES LFKECPHPDE KQRLELSKRL CLETRQVKFW  180
FQNRRTQMKT QLERHENSLL RQENDKLRAE NMSIRDAMRN PICTNCGGPA IIGDISLEEQ  240
HLRIENARLK DELDRVCALA GKFLGRPVSS MGPPPMPNSS LELGVGTING FGGLSSTVTT  300
TLPADFGTGI SNALPVVMPP NRSGPGVTGL DRSIERSMFL ELALAAMDEL VKMAQTDEPL  360
WIRSFEGSGR QVLNHEEYLR TFTPCIGLKP NGFVTEASRE TGMVIINSLA LVETLMDPNR  420
WAEMFPCMIA RTATTDVISS GMGGTRNGAL QLVEFYNSII NEHLINYFLL IILVHKKNKN  480
KTFFSFLEMH AELQVLSPLV PVREVNFLRF CKQHAEGVWA VVDVSIDTIR ETSGAPAFVN  540
CRRLPSGCVV QDMPNGYSKV TWVEHAEYDE SQVHQLYKPL IISGMGFGAQ RWVATLQRQC  600
ECLAILMSTS VSARDHTAIT AGGRRSMLKL AQRMTDNFCA GVCASTVHKW NKLNAGNVDE  660
DVRVMTRKSV DDPGEPPGIV LSAATSVWLP VSPQRLFNFL RDERLRSEWD ILSNGGPMQE  720
MAHIAKGQDH GNCVSLLRAS AINANQSSML ILQETCTDAA GSLVVYAPVD IPAMHVVMNG  780
GDSAYVALLP SGFAIVPDGP DSRGPLANGP TSGNGSNGGS QRVGGSLLTV AFQILVNSLP  840
TAKLTVESVE TVNNLISCTV QKIKAALQCE S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein