PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42417.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 157aa MW: 17249.7 Da PI: 8.1537

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	149.3	9.6e-47	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+a+lal+++ GAY42417.1 15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQA 113 7**********************************************************************************************9997 PP DUF260 100 e 100 e GAY42417.1 114 E 114 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence
MIMKESGRKQ GALSPCAACK LLRRRCAQDC VFAPYFPADE PQKFASVHKV FGASNVNKML 60 QELPEHQRSD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDSLQAQLAL AQAEVVHMRM 120 RQVSPSSSSS HNLPANSMDH MVDHHHQANI GGSLWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-62	LBD family protein