PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42479.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 540aa    MW: 60835.9 Da    PI: 5.106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.61.2e-1071635331374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfs 94 
                 lv+lLl+cAeav  +d++la ++L+++   a+p gd++qR+  +f+ +L++rl+   +++ +  + +  +  +      +e++ a++l ++++P++ f+
  GAY42479.1 163 LVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSL-LQNINANGTFTGGAM-DvplitREEKMEAFQLVYQTTPYISFG 259
                 68***************************************************98.555555555544443.347777899999*************** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledlele 192
                 +++aN+aI +a++g++ +HiiD++++  lQWp+L+++LasRpegpp++RiT + s++  +  el++  +   + A++lg+++ef+++ +  + + l+ e
  GAY42479.1 260 FMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ--NLSELKASMKPVLHDATSLGINLEFSMISEPvTPSLLTRE 356
                 *******************************************************66..889999999999999************7443588999*** PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +L++++gEal Vn++++lh+ ++es  + +   ++L+++k+l+P++++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s  r+++Er  ++
  GAY42479.1 357 NLDLREGEALFVNSIMHLHKYVKESRGSLK---AILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFA 452
                 **********************88776666...9***************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +ei+n+va eg++r+erhe++++Wr++l++aGF+ v l++   +qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  GAY42479.1 453 EEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKS--LSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQ 533
                 *************************************986..89**************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
METMNGWLRF PMHESFNHDL AIRRFCPARV EQEQREWEET MNELELLSPY HEDAITSTSQ  60
DLAASEVDEF VDSFINMDHE DKDDDREINK SPASADHEAE TFSMVNDGYG DQVSMMIEGN  120
DHHLETMSID FSGEDHDHHF AVVPEMVPSV EEVSHGVDQG LHLVHLLLAC AEAVGCRDTK  180
LAVSMLSQIW ASATPWGDSL QRVSYCFALG LKSRLSLLQN INANGTFTGG AMDVPLITRE  240
EKMEAFQLVY QTTPYISFGF MAANEAIRQA AQGKDSLHII DLGMERTLQW PSLIRSLASR  300
PEGPPRIRIT CLISNQNLSE LKASMKPVLH DATSLGINLE FSMISEPVTP SLLTRENLDL  360
REGEALFVNS IMHLHKYVKE SRGSLKAILQ AIKRLNPTLL TVVEQDANHN GPFFLGRFLE  420
SLHYYSAIFD SLEASLPRNS PLRMNIERLH FAEEIRNIVA YEGSDRIERH ERAHQWRRQL  480
GRAGFQLVGL KSLSQARMML SVYGCDGYTL ACEKGCLLLG WKGRPIMLAS AWQVNNASSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-81GRAS family protein