PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42481.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 270aa MW: 30240.1 Da PI: 6.0778

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.3	7.1e-56	84	188	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+ GAY42481.1 84 QLQMFWSNQmqeIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 182 89****988889********************************************************************************* PP NF-YC 97 prdelk 102 prdelk GAY42481.1 183 PRDELK 188 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MDQSDQTQQQ QQQQQQPVMG VVAGAGQMSY PPYQTAPLVA SGTPAVAVPS PTQPPSTFAS 60 SPHQLAYQQA QHFHHQQQQQ QQQQLQMFWS NQMQEIEQTA DFKNHSLPLA RIKKIMKADE 120 DVRMISAEAP VIFAKACEMF ILELTLRSWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD 180 IIPRDELKEE GLGVTKGALP VVGSPGDMPL YYVPPQHPVG HTGMIMGKPV DQAALYSGQQ 240 PRPPVAFMPW PQSQSQAQQQ QQPQQQQNDP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	1e-80	NF-YC family protein