PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42523.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 518aa MW: 56121.2 Da PI: 7.608

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8.3e-12	136	160	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ GAY42523.1 136 GEKDCAYYMQTRTCKFGDTCKFDHP 160 7889********************8 PP
2	zf-CCCH	25.6	2.2e-08	202	221	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++t Ck+G++CkF+H++ GAY42523.1 202 YFLKTQRCKFGSKCKFNHPK 221 8*****************96 PP
3	zf-CCCH	36.9	6.3e-12	244	268	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++GtCk+G++CkF H++ GAY42523.1 244 EPPCAFYLKNGTCKFGATCKFDHPK 268 79*********************96 PP
4	zf-CCCH	36.6	7.9e-12	326	348	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tG CkyG++C+++H++ GAY42523.1 326 DCPFYLKTGSCKYGSTCRYNHPE 348 7********************96 PP
5	zf-CCCH	38.6	1.8e-12	410	431	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG Ck+G++CkF+H+ GAY42523.1 410 ECDYYMKTGVCKFGEKCKFHHP 431 7********************8 PP
6	zf-CCCH	39.7	8.1e-13	461	482	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p GAY42523.1 461 CPYYMKTGTCKYGATCKFDHPP 482 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MANHLYGYSS SYGAGAGGGG GTPKSSAALS GVYTSRSLAD PYHLSESTLR YDPDHSIYDS 60 FRYSGYLSSQ AQQPWPPGVD PTDHLKRPSE ALYHPTLLGT HTSIGQSEAW YSTNSLAKRP 120 RIESASNLPV YPQRPGEKDC AYYMQTRTCK FGDTCKFDHP IWVPEGGIPD WKEVPVIASS 180 ESLPERPGEP DCPVSRISRV LYFLKTQRCK FGSKCKFNHP KDKLIGSSDS GNGDVSALPE 240 RPSEPPCAFY LKNGTCKFGA TCKFDHPKDF QLPSVGQENG IGEQNESVIK TDETTGLLNP 300 GMSLFSHAPA MLHNSKGLPI RPGELDCPFY LKTGSCKYGS TCRYNHPERT AINPPAAAIV 360 HPLITSPAAS LGISVVSPAA SLYQTIDPRL AQATLGVSPS LYPQRPGQME CDYYMKTGVC 420 KFGEKCKFHH PIDRSAAKTP SQETVKLTLA GLPRREGAVH CPYYMKTGTC KYGATCKFDH 480 PPPGEVMAIS ALDGTSTAVG EEVKGDEKES EVAPSTAV

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MANHLYGYSS SYGAGAGGGG GTPKSSAALS GVYTSRSLAD PYHLSESTLR YDPDHSIYDS  60
FRYSGYLSSQ AQQPWPPGVD PTDHLKRPSE ALYHPTLLGT HTSIGQSEAW YSTNSLAKRP  120
RIESASNLPV YPQRPGEKDC AYYMQTRTCK FGDTCKFDHP IWVPEGGIPD WKEVPVIASS  180
ESLPERPGEP DCPVSRISRV LYFLKTQRCK FGSKCKFNHP KDKLIGSSDS GNGDVSALPE  240
RPSEPPCAFY LKNGTCKFGA TCKFDHPKDF QLPSVGQENG IGEQNESVIK TDETTGLLNP  300
GMSLFSHAPA MLHNSKGLPI RPGELDCPFY LKTGSCKYGS TCRYNHPERT AINPPAAAIV  360
HPLITSPAAS LGISVVSPAA SLYQTIDPRL AQATLGVSPS LYPQRPGQME CDYYMKTGVC  420
KFGEKCKFHH PIDRSAAKTP SQETVKLTLA GLPRREGAVH CPYYMKTGTC KYGATCKFDH  480
PPPGEVMAIS ALDGTSTAVG EEVKGDEKES EVAPSTAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein