PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42614.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SRS

Protein Properties

Length: 344aa MW: 36966 Da PI: 7.2857

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42614.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217	4.3e-67	116	262	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 g++sCqdCGnqakkdCah+RCRtCCksrgfdC+thvkstWv+a+krre+qqql+ ++ + + + +++kr+re+ + +s+l++++l+ + s e+ + GAY42614.1 116 GGMSCQDCGNQAKKDCAHMRCRTCCKSRGFDCQTHVKSTWVAASKRREKQQQLTLQQ--QRLQLRGETNKRPREE-NPISSSLACSRLPANASGFEV-A 210 789********************************************99998764..4456788999999997.667889999999998877555.5 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++lP evs++avfrcv+vs++dd+e+++aYqt+v+igGh+fkGiLydqG+e+ GAY42614.1 211 ENLPGEVSTQAVFRCVKVSGIDDSEDQFAYQTSVNIGGHLFKGILYDQGPES 262 56**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MAGFFSLGRV SSSNNNNQED QQHNPANPIT PENWFWYKNE DISYKQGASF ELWQQQAELL 60 LQQRQQQQQD LYSSAAAAGL GMGPISRSAI NVVGGIDNSS SRSAFMMVRS SSGIGGGMSC 120 QDCGNQAKKD CAHMRCRTCC KSRGFDCQTH VKSTWVAASK RREKQQQLTL QQQRLQLRGE 180 TNKRPREENP ISSSLACSRL PANASGFEVA ENLPGEVSTQ AVFRCVKVSG IDDSEDQFAY 240 QTSVNIGGHL FKGILYDQGP ESTYTTGESS SGGGIQLQPL NLITAGAGPD PVNTTATPVS 300 PAAAAVTASS STAAFLDPSS LYPTPFTTFM AAAGTQFFPS PRSS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MAGFFSLGRV SSSNNNNQED QQHNPANPIT PENWFWYKNE DISYKQGASF ELWQQQAELL  60
LQQRQQQQQD LYSSAAAAGL GMGPISRSAI NVVGGIDNSS SRSAFMMVRS SSGIGGGMSC  120
QDCGNQAKKD CAHMRCRTCC KSRGFDCQTH VKSTWVAASK RREKQQQLTL QQQRLQLRGE  180
TNKRPREENP ISSSLACSRL PANASGFEVA ENLPGEVSTQ AVFRCVKVSG IDDSEDQFAY  240
QTSVNIGGHL FKGILYDQGP ESTYTTGESS SGGGIQLQPL NLITAGAGPD PVNTTATPVS  300
PAAAAVTASS STAAFLDPSS LYPTPFTTFM AAAGTQFFPS PRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-70	SRS family protein