PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42754.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26404 Da PI: 7.0964

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	68	120	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq e Le +F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k GAY42754.1 68 KRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDK 120 5689***********************************************99 PP
2	HD-ZIP_I/II	114.4	6.7e-37	67	157	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++eq++lLE++F +e+kLe++rK +la eLgl+prqvavWFqnrRAR ktk++E+ y++Lk+a+++++ e++rLe+ev++L+e+l+ GAY42754.1 67 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLS 157 9**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MIREMIVTNT NHQVEDNKSN MVLLSQFYPS DVLTPTGIVP QQGEPSKPKR RQRKRNTNGN 60 GGFRALKKRK LTAEQAELLE MHFGNEHKLE SDRKDKLAAE LGLDPRQVAV WFQNRRARDK 120 TKKIEETYAT LKTAHENVVV EKTRLESEVA TLKEKLSVAE KEIKKMSELI EGISLNNPSA 180 TIPTDMDTVD SPFTLDPFAS NLGWFDYEDL LYLLQQNYIS AAEWLLLHTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	70	KRRQRKRNTNGNGGFRALKKRK
2	53	74	KRRQRKRNTNGNGGFRALKKRK
3	67	96	KKRKLTAEQAELLEMHFGNEHKLESDRKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-62	HD-ZIP family protein