PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42815.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 309aa    MW: 35128.6 Da    PI: 10.2568
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-1520107196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ffkv     +++s++l +p  fa++ + + + +k ++++d  gr+W+ k+  +   g +v++++W++F+  + L+ gDf+vFk++g+s f   vk+
  GAY42815.1  20 FFKVY--LPAFSSKQLAIPPAFAKHLN-V-TVPKHVIIRDYAGRQWRGKM--EEVEGVIVIKDCWERFACVHSLELGDFLVFKYNGSSLF--DVKI 107
                 77877..7899999*********5444.3.46678***************..9**99***************************997777..5554 PP
2B356.93.8e-182213041699
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                 + ++ + +++hg+k   + +++l+d++gr+W vk+++r + gr+v+t+GW++F ++++L++gD +vF+  l++  +++e++v+v+rk
  GAY42815.1 221 VNVSVRVVRSHGIK--LEPEMMLRDQNGRKWPVKISFRTN-GRIVITGGWSDFWREQKLEAGDKCVFEfvLSRGnMSKEMKVQVVRK 304
                 56677889999866..4449***************98777.589************************76565569*******9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MARPTRRKSS PSDKSTDSEF FKVYLPAFSS KQLAIPPAFA KHLNVTVPKH VIIRDYAGRQ  60
WRGKMEEVEG VIVIKDCWER FACVHSLELG DFLVFKYNGS SLFDVKIYGI NGCLKEGTNT  120
THHKKETPIA DMNAIPVKKE IGREAEQTSI MDDPSCNQDD LEIMLISSGK RGGSSVASRV  180
KTRLRGEKDT GEDRAFKAAR FVVPKNPHFV SVFSQYSRYA VNVSVRVVRS HGIKLEPEMM  240
LRDQNGRKWP VKISFRTNGR IVITGGWSDF WREQKLEAGD KCVFEFVLSR GNMSKEMKVQ  300
VVRKMKTCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-40B3 family protein