PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42948.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 975aa    MW: 108062 Da    PI: 5.5194
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.6e-21147277199
                 EEEE-..-HHHHTT-EE--HHH.HTT...................................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................................ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                 f+k+lt sd++++g +++p++ ae+                                     ++++ s++l+++d++ ++W++++iyr++++r++lt+G
  GAY42948.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfpplvglnsvkwiilqpvvdytysclhiallfqdyTMQPP-SQELVVRDLHDNTWTFRHIYRGQPKRHLLTTG 244
                 99*********************999*****99999999999999999999888888888844444.469***************************** PP

                 HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  65 WkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 W+ Fv +++L++gD+v+F   ++++ +l+v+v+r+
  GAY42948.1 245 WSLFVGSKRLRAGDSVLFI--RDEKSQLMVGVRRA 277
                 *******************..4577778*****97 PP
2Auxin_resp115.45e-38302385183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++s F+++YnPra++s+Fv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  GAY42948.1 302 AAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYgTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 385
                 79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    
MGSVEEKIKA GGLVIRAQTT LLEEMKLLKE MQDQSGARKA INSELWHACA GPLVFLPQVG  60
SLVYYFPQGH SEQVAASTKR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIYAQMSL  120
QPVNSEKDVF PIPDFGLKPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLVGLN  180
SVKWIILQPV VDYTYSCLHI ALLFQDYTMQ PPSQELVVRD LHDNTWTFRH IYRGQPKRHL  240
LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA  300
AAAHAASNRS QFTIFYNPRA CPSDFVIPLA KYRKSVYGTQ MSVGMRFGMM FETEESGKRR  360
YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCSDKQKRV SPWEIETPES LFIFPSLTSG  420
LKRPFHSGIL ATETEWGSLI KRPLACPEIV PGVMPYSSIS NLCSEQLIKM MLKPQLVNNP  480
GSFAASSLQE TSGAKGAHLE EVKTLQSTIN QKPRLVPSEM NRIDNQNCSQ ICLNQADTVN  540
SSLSRINIPE KPHPPSKCEM QAPPGMNTDH LKSEPRQSIE QSSNLTSAAD CSMEKPSGPL  600
NPQNLVNQHA FHNQNEGLPQ LQSSWPMQSQ LESVFQAQQI NVPQSDSTAH SGSLPILDTD  660
EWMSHTSCNS LAGTYNRSPG PLLMFGLQEP STMLPEVINP SLSFPGQEMW DHQPNNLRFL  720
SPVDPLTSFT QQDHCSLNSS GLRDLSDESN NQSGIYSCLN IDVSNGGSTM IDHSVSSAIL  780
DEFCTLKDAN FQNPPDCLMN TFSSSQDVQS QITSASLADS QAFSRQDFPD NSGGTSSSNV  840
DFDESSLLQN TSWQPVVPPM RTYTKVQKTG SVGRSIDVTN FKNYDELCSA IERMFGLEGL  900
LNDPRGTEWK LVYVDYENDV LLVGDDPWEE FVGCVRCIRI LSPQEVEQMS EEGMKLLNSA  960
AMQGIDCTKP EGGRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein