PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43117.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 476aa MW: 50084.3 Da PI: 9.7881

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GAY43117.1 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	17.2	1.4e-05	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k + +s+ k H++t+ GAY43117.1 141 YKCERCSKKYAVQSDWKAHMKTC 163 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MTEIVNSSAM TVASATGEAS VSSPGSQIQV IPPTQKKRRN LPGMPDPDSE VIALSPKTLL 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE VRKKVYVCPE STCVHHNPAR 120 ALGDLTGIKK HFSRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYKC DCGTIFSRRD 180 SFITHRAFCD ALAEESARTR TPAIEGNPNA KTVVSSPPPP PLTPSTGVVS PGLSIQSSEV 240 PADNPLIHSP PRPVATTPSA STSTSTVFAS VFSSSAISQP TQATGPSSFS NQISVSSTGI 300 EPTSLSLSPS LYLSSNNLFS KPEPSHIHYA PSPQPAMSAT ALLQKAAQIG ASSSSPSLLR 360 GLGLTMSSSS ADNQQENTNS ASAAAGLGLG LNSGFTDAMM DPSSLFGSKP TTLDLLGLGI 420 GADGASTTGL SAFLTSFSGG FNVRPSAASY GGRRGSSPGD PWEGAPERKP NGAALP

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MTEIVNSSAM TVASATGEAS VSSPGSQIQV IPPTQKKRRN LPGMPDPDSE VIALSPKTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE VRKKVYVCPE STCVHHNPAR  120
ALGDLTGIKK HFSRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYKC DCGTIFSRRD  180
SFITHRAFCD ALAEESARTR TPAIEGNPNA KTVVSSPPPP PLTPSTGVVS PGLSIQSSEV  240
PADNPLIHSP PRPVATTPSA STSTSTVFAS VFSSSAISQP TQATGPSSFS NQISVSSTGI  300
EPTSLSLSPS LYLSSNNLFS KPEPSHIHYA PSPQPAMSAT ALLQKAAQIG ASSSSPSLLR  360
GLGLTMSSSS ADNQQENTNS ASAAAGLGLG LNSGFTDAMM DPSSLFGSKP TTLDLLGLGI  420
GADGASTTGL SAFLTSFSGG FNVRPSAASY GGRRGSSPGD PWEGAPERKP NGAALP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	104	KLKQRNSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-116	C2H2 family protein