PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY43346.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 237aa    MW: 27186.3 Da    PI: 9.9322
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY43346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.9e-181150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i+n+s r+ tf kR++g+lKK +ELS+LC+++++ iifs+
  GAY43346.1 11 ISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSP 50
                9**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MTRKKVKLAY ISNDSARKAT FKKRKKGLLK KVSELSTLCG IDACAIIFSP YDSQPEVWPS  60
PLGVQRVLSQ FKKMPEMEQS KKMVNQDSFL RQRIAKANEQ LKKQRKDNRE KEITQVMFQS  120
LTGKALLNLN MMDLNDLGWL IEQNLKEICK RMETLSKGTS THNSSNYGVV KNNGEASQQQ  180
VDKSSGFDQM SMEAMQKQQW LLDLMNPQEH MGFGGEEIMY PFGESSHSTL WSNPFYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYISNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-58M-type_MADS family protein