PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY43522.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 679aa    MW: 76697.4 Da    PI: 7.0662
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY43522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.83.1e-9529263422374
        GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                 ++Larl++++ p g+p+qR+a+yf+eAL+  l+   +++ +  p ++ ++ +++ ++ a+k+fsevsP+++f ++t+Nqa+lea++ ++r+Hi+Dfdi+
  GAY43522.1 292 RILARLNHQVFPVGKPLQRAAFYFKEALQLFLLM-NNQVTN-PPLRSPTPVDVIFKMGAYKVFSEVSPLIQFINFTCNQALLEALDDADRIHIVDFDIG 388
                 79******************************98.455554.5566666689*********************************************** PP

        GRAS 121 qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkpgEalaVnlvlqlhrllde 216
                  G+QW++++q+L+ R+ +g+ps++iT+++sp+++++ el  ++e+L++fA+++gv+fe +v+  ++l++   +l  L+ +++Ea+aVn+ +   +  ++
  GAY43522.1 389 FGAQWASFMQELSMRSnRGTPSMKITAFASPSTHHHIELGLMRENLTQFANAIGVSFELDVINFESLDQTsyTLPILQSSENEAVAVNFPI--WSSSNQ 485
                 ***************9899*******************************************8888877633667899999********99..444445 PP

        GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                 + +l+s    +L++vk+lsPk+vv +++ +d ++ +F e++l+al+ y  l++sl+a      ++ +k+Er+ll+++i++vv  + +       ++  W
  GAY43522.1 486 PSALPS----LLRFVKQLSPKIVVSADRGCDKSDLPFPEHILHALQSYINLLESLDAV-NVMPDALNKIERFLLQPRIESVVLGRLRG----PDRMPMW 575
                 666666....*********************************************665.34558899****************99888....89999** PP

        GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +  + +aGF+pv++s+++++qa++++++++++g++ve++++slvl+W++r+L+s+SaWr
  GAY43522.1 576 KTLFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQQRELISASAWR 634
                 **********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    
MSVPSHLQEK CVFKIQDFTP ICSQGKWKQK HQQQQQVNNN SFCFSCNIDN EPTSVLHMRR  60
SQSPPTSAST LSSSLNNTNT TTTNSVPQEP VSPLLNNERK DEWASELLSM PNGLEVIPTG  120
AERCGLGLED WETMLSESGQ EQSILKWIAG DVDDSPFGLK QLLQSGGNGN APEEKPQILN  180
PQIFMNNQQV QSQHHQNPNF FFPVSAYPLH QENHHHSHLL QPQPKRHNSG GSLDLSSPHV  240
PKPPFSDPRH EFLLRNHQQQ MGFYQNVHFL PQHLQQKSLI VSAKQKVLSP GRILARLNHQ  300
VFPVGKPLQR AAFYFKEALQ LFLLMNNQVT NPPLRSPTPV DVIFKMGAYK VFSEVSPLIQ  360
FINFTCNQAL LEALDDADRI HIVDFDIGFG AQWASFMQEL SMRSNRGTPS MKITAFASPS  420
THHHIELGLM RENLTQFANA IGVSFELDVI NFESLDQTSY TLPILQSSEN EAVAVNFPIW  480
SSSNQPSALP SLLRFVKQLS PKIVVSADRG CDKSDLPFPE HILHALQSYI NLLESLDAVN  540
VMPDALNKIE RFLLQPRIES VVLGRLRGPD RMPMWKTLFA SAGFSPVTFS NFTETQAECV  600
VKRTPVRGFH VEKRQASLVL CWQQRELISA SAWRMPTVVK TTGTLKIMPF EYLMQNELLP  660
PVCYFSEADI RQIHEARFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-120GRAS family protein