PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY43523.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 720aa    MW: 80246.7 Da    PI: 6.571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY43523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3299.1e-1013577192374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  ++L+++Ae v +g+++ aq +Larl++++ p g+p+qR+a+yf+eAL+  l+   +++ +  p ++ ++ +++ ++ a+k+fsevsP+++f ++t+Nq
  GAY43523.1 357 LDQLYKAAELVGTGNFSHAQGILARLNHQVFPVGKPLQRAAFYFKEALQLFLLM-NNQVTN-PPLRSPTPVDVIFKMGAYKVFSEVSPLIQFINFTCNQ 453
                 679*************************************************98.455554.5566666689*************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrv 196
                 a+lea++ ++r+Hi+Dfdi+ G+QW++++q+L+ R+ +g+ps++iT+++sp+++++ el  ++e+L++fA+++gv+fe +v+  ++l++   +l  L+ 
  GAY43523.1 454 ALLEALDDADRIHIVDFDIGFGAQWASFMQELSMRSnRGTPSMKITAFASPSTHHHIELGLMRENLTQFANAIGVSFELDVINFESLDQTsyTLPILQS 552
                 ***********************************9899*******************************************88888776336678999 PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++Ea+aVn+ +   +  +++ +l+s    +L++vk+lsPk+vv +++ +d ++ +F e++l+al+ y  l++sl+a      ++ +k+Er+ll+++i+
  GAY43523.1 553 SENEAVAVNFPI--WSSSNQPSALPS----LLRFVKQLSPKIVVSADRGCDKSDLPFPEHILHALQSYINLLESLDAV-NVMPDALNKIERFLLQPRIE 644
                 99********99..444445666666....*********************************************665.34558899************ PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vv  + +       ++  W+  + +aGF+pv++s+++++qa++++++++++g++ve++++slvl+W++r+L+s+SaWr
  GAY43523.1 645 SVVLGRLRG----PDRMPMWKTLFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQQRELISASAWR 719
                 ****99888....89999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MSVPSHLQEK CVFKIQDFTP ICSQGKWKQK HQQQQQVNNN SFCFSCNIDN EPTSVLHMRR  60
SQSPPTSAST LSSSLNNTNT TTTNSVPQEP VSPLLNNERK DEWASELLSM PNGLEVIPTG  120
AERCGLGLED WETMLSESGQ EQSILKWIAG DVDDSPFGLK QLLQSGGNGN GQNPFVDFDG  180
NAGGGGLGFV DQPPNFESVG GGGSLASVSL PPGVNIQQSQ NFVEAPEEKP QILNPQIFMN  240
NQQVQSQHHQ NPNFFFPVSA YPLHQENHHH SHLLQPQPKR HNSGGSLDLS SPHVPKPPFS  300
DPRHEFLLRN HQQQMGFYQN VHFLPQHLQQ KSLIVSAKQK VLSPGSEEMS RQQHALLDQL  360
YKAAELVGTG NFSHAQGILA RLNHQVFPVG KPLQRAAFYF KEALQLFLLM NNQVTNPPLR  420
SPTPVDVIFK MGAYKVFSEV SPLIQFINFT CNQALLEALD DADRIHIVDF DIGFGAQWAS  480
FMQELSMRSN RGTPSMKITA FASPSTHHHI ELGLMRENLT QFANAIGVSF ELDVINFESL  540
DQTSYTLPIL QSSENEAVAV NFPIWSSSNQ PSALPSLLRF VKQLSPKIVV SADRGCDKSD  600
LPFPEHILHA LQSYINLLES LDAVNVMPDA LNKIERFLLQ PRIESVVLGR LRGPDRMPMW  660
KTLFASAGFS PVTFSNFTET QAECVVKRTP VRGFHVEKRQ ASLVLCWQQR ELISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-126GRAS family protein