PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43572.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 207aa MW: 23836.5 Da PI: 8.8425

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.5	7.2e-19	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ +G ++Wk +a + g++R++k+c++rw++yl GAY43572.1 27 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 74 89********************************************97 PP
2	Myb_DNA-binding	51.1	3.2e-16	80	125	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l GAY43572.1 80 RGNISDDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 125 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MAPTKNNNNN NNNNNNNDAS GKNVVNRGAW TAEEDRKLTE YIEIHGAKRW KNVATESGLN 60 RCGKSCRLRW LNYLRPNIKR GNISDDEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY 120 WNSHLSKKIN HKQKTPQQPQ QPATIRLKVP ENTSEIAPVN EEGGRQIANS EVNLDFDFST 180 EGLCGLDWVN KFLQLDDDHL WLTDQQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	8e-56	MYB family protein