PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43765.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 230aa MW: 25824.2 Da PI: 8.1537

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.8e-09	2	31	19	48
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 +G g W+ ++r+ g++R++k+c++rw++yl GAY43765.1 2 YGAGKWHQVPRRAGLNRCRKSCRLRWLNYL 31 89999***********************97 PP
2	Myb_DNA-binding	22.5	2.7e-07	37	77	1	39
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 rg + ++E +l ++++k+lG++ W++Ia++++ gRt ++ GAY43765.1 37 RGEFAADEIDLMIRLHKLLGNRqehMWSLIAARFP-GRTSND 77 788999***************************.*986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MYGAGKWHQV PRRAGLNRCR KSCRLRWLNY LKPNIKRGEF AADEIDLMIR LHKLLGNRQE 60 HMWSLIAARF PGRTSNDKLK PEAPKIAKHN VIKPRPRTFC KDLTWLRPKV TVLENVQVQL 120 KDNISNKLPS PITVDQTALE NDDIKRWETL LEEKVDDGGS TYCSTSGEHN ISLGDGGSAY 180 CSEHNTSLCA ASEAGCYNAG EMVTDCGQAS GKNSERCEEF LEHVPAQESG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	4e-40	MYB family protein