PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43942.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 391aa MW: 44452.6 Da PI: 9.7052

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.9e-17	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l+ +vkq+G++ W++I+++mg ++R +k+c +rw +yl GAY43942.1 4 RQRWQPEEDAILKAYVKQYGPKEWNLISQRMGktLNRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	33.9	7.4e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + GAY43942.1 59 KGSLSPEEQSLVISLQAKYGNK-WKKIASEVP-GRTAKRLGKWWEVF 103 57789***************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MKERQRWQPE EDAILKAYVK QYGPKEWNLI SQRMGKTLNR DPKSCLERWK NYLKPGIKKG 60 SLSPEEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQLKQ LHKEKQRREY 120 SDQQQEGNVP VVGLGSGSCS SPEKVAQGRY DHILETFAEK YVQPKLFAMQ ALNLNLNPVP 180 ANAIMPNLPL GGADPEPVLS LGSGPTWMNN HNHNHHTSGS SLTSSTSSTT TASPSVSLSL 240 SPSEPGIELG DMNPVARFMP GPQVGTLVQY CKELEEGRQS WVQHKKEATW RLSRLEQQLE 300 SEKARKRREK MDEIETKIRA LREEELSHLG RIESEYKEQL SALQRDAESK EAKLMEAWCS 360 RHVKLLKLVE QIGVHQSSTS HGFCVVPKDM H

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MKERQRWQPE EDAILKAYVK QYGPKEWNLI SQRMGKTLNR DPKSCLERWK NYLKPGIKKG  60
SLSPEEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQLKQ LHKEKQRREY  120
SDQQQEGNVP VVGLGSGSCS SPEKVAQGRY DHILETFAEK YVQPKLFAMQ ALNLNLNPVP  180
ANAIMPNLPL GGADPEPVLS LGSGPTWMNN HNHNHHTSGS SLTSSTSSTT TASPSVSLSL  240
SPSEPGIELG DMNPVARFMP GPQVGTLVQY CKELEEGRQS WVQHKKEATW RLSRLEQQLE  300
SEKARKRREK MDEIETKIRA LREEELSHLG RIESEYKEQL SALQRDAESK EAKLMEAWCS  360
RHVKLLKLVE QIGVHQSSTS HGFCVVPKDM H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	310	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	6e-58	MYB family protein