PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY44139.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 69aa    MW: 8030.43 Da    PI: 10.7981
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY44139.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.8e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rienks+ qvtfskRr g++KKA ELSvLCd++ a++ifss+g+lye++s
  GAY44139.1 10 RIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCS 59
                9***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    
MGRKKLQLQR IENKSRCQVT FSKRRSGLIK KARELSVLCD VDLALVIFSS RGRLYEFCSA  60
DRELRTDPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.35e-27MIKC_MADS family protein