PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44141.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 312aa MW: 34159.2 Da PI: 9.2887

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.9e-41	24	100	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adl ++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ GAY44141.1 24 CLVDGCTADLGKCRDYHRRHKVCELHSKTPKVTIHGREQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MESSPSGSSK RARVPGNGTQ IPSCLVDGCT ADLGKCRDYH RRHKVCELHS KTPKVTIHGR 60 EQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP DSLSLNSGRF LSNPQGTKFI 120 PFGSPELFST SAAPPVWSGI VKAKTDEMLH NNHLQLDFTN GNLFCGSSSH DDKEGKQFPF 180 LEGAATSALP RASSVCQPLL TANSSLGNCG SSSQKVFCNR LNRVVHSSRA LSLLSSPQPQ 240 TRGVGLNHTA QTDSKLIPPA QSLITSLNYS RLGMVVQPSN ASLHDPDTFE IGPARDESST 300 SGTHQSLSFS WE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	98	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-51	SBP family protein