PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44245.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 27907.5 Da PI: 8.1367

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.2	8.2e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s GAY44245.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP
2	K-box	73.6	5.8e-25	75	174	1	100
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 y++ + +++++++++ +++e+ kLk++ e Lq+ qR++ GedL++L l+eL+qLe+qL +sl ++Rs K++ l++++elq+ke++l e+n+ L++kle GAY44245.1 75 YGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 173 56788899999**************************************************************************************98 PP K-box 100 e 100 e GAY44245.1 174 E 174 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS 60 PSMHQTLEKY ERCSYGTLQA NHQSAKETQA SYEEYIKLKE KHEALQHLQR QFFGEDLGRL 120 GLEELEQLER QLGSSLGRVR SLKTRNQLDK LSELQRKEEM LLEANNILSM KLEEINAARR 180 SHPWAAEEQN ITYSNQPAHS EGSFGHLHSN GTLHLGHNPG VTAHERTVAT SEQDVHSLIP 240 GWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	2e-81	MIKC_MADS family protein