PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44246.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 260aa MW: 30018.3 Da PI: 8.8908

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44246.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.8	9.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g lKKA+E+SvLCdaevaviifs++gkl+eys+ GAY44246.1 9 KRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYST 59 79***********************************************96 PP
2	K-box	77.3	4.1e-26	127	191	36	100
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 Rh+lGedLesLslk++qqLeqqL+++lk+iRs+Kn+l+ e+i+elqkkek+++e+n+ L k+++e GAY44246.1 127 RHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKKEKSIEEQNNLLVKQIKE 191 9*************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRAGFLK KAHEISVLCD AEVAVIIFSH KGKLFEYSTD 60 SCMEKILERY ERYAYAERQL IAPDPESQRN WPLECNNLKA KIDLLQKNQR CSSKSTFYTG 120 SQIDLFRHYL GEDLESLSLK DIQQLEQQLD TALKHIRSRK NQLMQESISE LQKKEKSIEE 180 QNNLLVKQIK EREKAAAQQA QWGNQIQNQV PNTLSFLLPQ PPPCLRLGGA YQEQASEMRR 240 NELNLTLEPV CSCSLGCFAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	1e-114	MIKC_MADS family protein