PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44247.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 243aa MW: 28096.2 Da PI: 8.8489

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.9	8.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g lKKA+E+SvLCdaevaviifs++gkl+eys+ GAY44247.1 9 KRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYST 59 79***********************************************96 PP
2	K-box	101.6	1e-33	85	174	11	100
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + ++ e ++Lk++i+ Lq++qRh+lGedLesLslk++qqLeqqL+++lk+iRs+Kn+l+ e+i+elqkkek+++e+n+ L k+++e GAY44247.1 85 PESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKKEKSIEEQNNLLVKQIKE 174 556789*********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRAGFLK KAHEISVLCD AEVAVIIFSH KGKLFEYSTD 60 SCMEKILERY ERYAYAERQL IAPDPESQRN WPLECNNLKA KIDLLQKNQR HYLGEDLESL 120 SLKDIQQLEQ QLDTALKHIR SRKNQLMQES ISELQKKEKS IEEQNNLLVK QIKEREKAAA 180 QQAQWGNQIQ NQVPNTLSFL LPQPPPCLRL GGAYQEQASE MRRNELNLTL EPVCSCSLGC 240 FAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	1e-118	MIKC_MADS family protein