PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44411.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 347aa MW: 37932.3 Da PI: 6.4157

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.1	8.7e-09	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++ fC+ ++ +lC +C +++H GAY44411.1 4 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAA 36 58*****************************54 PP
2	zf-B_box	27.7	5.6e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ GAY44411.1 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91 689****************************6689999999986 PP
3	CCT	69.3	9.9e-24	282	325	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ GAY44411.1 282 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 325 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MASKLCDSCK SATATVFCRA DSAFLCVNCD TKIHAANKLA SRHARVWVCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVDS SAVKQGNGGV VNFLDEDRYL 120 DHVDGRSGDV SREEAEAASW LLPIPKVADL NTGQAQEPYV FPDMDPYLDL DYGHVDTKLE 180 AQEQNSSGTD GVVPVQTRNV NANGHLVNDA CFDLDFPGSK SYGYGYNSHS QCLSQSVSSS 240 SLEVGVVPDG SSAMTDITNP YGKGVGVEAG NQTVVQISAA DREARVLRYR EKRKNRKFEK 300 TIRYASRKAY AEMRPRIKGR FAKRTDLEVE PADRSSSIYG FGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MASKLCDSCK SATATVFCRA DSAFLCVNCD TKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVDS SAVKQGNGGV VNFLDEDRYL  120
DHVDGRSGDV SREEAEAASW LLPIPKVADL NTGQAQEPYV FPDMDPYLDL DYGHVDTKLE  180
AQEQNSSGTD GVVPVQTRNV NANGHLVNDA CFDLDFPGSK SYGYGYNSHS QCLSQSVSSS  240
SLEVGVVPDG SSAMTDITNP YGKGVGVEAG NQTVVQISAA DREARVLRYR EKRKNRKFEK  300
TIRYASRKAY AEMRPRIKGR FAKRTDLEVE PADRSSSIYG FGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-137	CO-like family protein