PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY45135.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25629.2 Da    PI: 9.2239
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY45135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-211864349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                i  k n qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + +
  GAY45135.1 18 IPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSF 64
                7789999**********************************997766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MEMKKPCAGR QKIAISKIPK KNNLQVTFSK RRAGVFKKAS ELSTLCGVDI ALIVFSPANK  60
AFSFGHPNVD SILDLYLARN PNPPSESSTD RLIEAHRNAN IRELNMQLTQ VLHQLEVEKK  120
HGEVLSEIRK ASCRQCWWEA PINELGLHEL EQLKTAMEEL KKNVEQQANK ILIDSKNNPS  180
PFFGVNNQNI NPHHHQSKLP LGIPPSSNDA LPNFYSSGFG HYHDHQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-56M-type_MADS family protein