PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY45136.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18267.1 Da    PI: 10.3385
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY45136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.21.1e-081839324
                --SHHHHHHHHHHHHHHHHHHH CS
      SRF-TF  3 ienksnrqvtfskRrngilKKA 24
                i  k n qvtfskRr+g++KKA
  GAY45136.1 18 IPKKNNLQVTFSKRRAGVFKKA 39
                7789999**************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MEMKKPCAGR QKIAISKIPK KNNLQVTFSK RRAGVFKKAI FSPANKAFSF GHPNVDSILD  60
LYLARNPNPP SESSTDRLIE AHRNANIREL NMQLTQKHGE VLSEIRKASC RQCWWEAPIN  120
ELGLHELEQL KTAMEELKKN VEQQANKILI DSKNNPSPFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-37M-type_MADS family protein