PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY45280.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18937.6 Da    PI: 7.4414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY45280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.8e-182774249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie+ s r v fskR++g++ KA EL  LCda++av+i s++g+l+ +
  GAY45280.1 27 KIEDASSRIVAFSKRKKGLFNKAGELHRLCDANIAVVIQSPSGRLFSF 74
                69*******************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MAMEMTNANS NKKKPCGKGR RKVEIRKIED ASSRIVAFSK RKKGLFNKAG ELHRLCDANI  60
AVVIQSPSGR LFSFGKPSAD HVIDKFLRDA GYNHQSKEET EDMEESTELG GGGGGGVEYW  120
WEESTEGLSL EELKKYMDSL EALRNNVAIK LEEMMMRRAC ERDLLSFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11327KKPCGKGRRKVEIRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-21M-type_MADS family protein