PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45401.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 503aa MW: 55041 Da PI: 8.4476

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.7	4.6e-16	178	227	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++ rW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GAY45401.1 178 SQYRGVTFYRRTSRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 227 78*****************......55**********************997 PP
2	AP2	41.4	3.5e-13	270	320	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+ + eAa+a+++a+ k +g GAY45401.1 270 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEAEAARAYDKAAIKQNG 320 89******.7**...5...334336******99********99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MLDLNLDIAS CESSSICADK NKKKINYSSN NNIKITAMQM EDSGTSNSSV INNEEAADNA 60 SNNHVSFPFV FGIFKKENED DDNNNNNYQP AASAAAAAAA ILDDKAVPIT RQLFPVTGAG 120 STTSATTGQW LNLSCATAAA AADDVDDESA AGGQGLKPVQ QKPQQVRKSR RGPRSRSSQY 180 RGVTFYRRTS RWESHIWDCG KQVYLGGFDT AHSAARAYDR AAIKFRGVDA DLNFGVTDYE 240 EDMKQMKHLS KEEFVLILRR QSNGFARGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL 300 FDNEAEAARA YDKAAIKQNG REAVTNFEPS AYQRETLLDS KNGGSSNNLN LDLSIGISQP 360 SSTIYCEACQ MPNKERRVLD STVYASMGVQ LQPHHPHHGL TMPPQSHEEM AKEKRVQGVS 420 SPGFTNWAWQ MHNNGSVAAM PVNLLSSAAS SGFSSSPTTA PAANTIQVQQ QINNNPAARN 480 MFLATQNTSA AIDNSHHLRN YRS

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MLDLNLDIAS CESSSICADK NKKKINYSSN NNIKITAMQM EDSGTSNSSV INNEEAADNA  60
SNNHVSFPFV FGIFKKENED DDNNNNNYQP AASAAAAAAA ILDDKAVPIT RQLFPVTGAG  120
STTSATTGQW LNLSCATAAA AADDVDDESA AGGQGLKPVQ QKPQQVRKSR RGPRSRSSQY  180
RGVTFYRRTS RWESHIWDCG KQVYLGGFDT AHSAARAYDR AAIKFRGVDA DLNFGVTDYE  240
EDMKQMKHLS KEEFVLILRR QSNGFARGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL  300
FDNEAEAARA YDKAAIKQNG REAVTNFEPS AYQRETLLDS KNGGSSNNLN LDLSIGISQP  360
SSTIYCEACQ MPNKERRVLD STVYASMGVQ LQPHHPHHGL TMPPQSHEEM AKEKRVQGVS  420
SPGFTNWAWQ MHNNGSVAAM PVNLLSSAAS SGFSSSPTTA PAANTIQVQQ QINNNPAARN  480
MFLATQNTSA AIDNSHHLRN YRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	5e-74	AP2 family protein