PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45417.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 237aa MW: 26215.9 Da PI: 7.6606

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.6e-42	80	179	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la++++ GAY45417.1 80 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQA 178 7***********************************************************************************************998 PP DUF260 100 e 100 e GAY45417.1 179 E 179 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MECKHKINVA IPITNMKNTQ FSSPSTFSTS PPSQSSPRFP SPNHQQLSSP ESSPSFKASP 60 SQSSPNLAAP LSPPPIVLSP CAACKILRRR CVEKCVLAPY FPPTEPYKFT IAHRVFGASN 120 IIKFLQELPE SQRADAVSSM VYEASARIRD PVYGCAGAIC HLQKQVSELQ AQLAKAQAEL 180 VTMESQQRNL ITLICMEMAQ SQEQVLQQQQ QQQQQFMDTS CFLDDNGIGS AWEPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-63	LBD family protein