 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GAY45744.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
| Family | MYB | ||||||||
| Protein Properties | Length: 280aa MW: 31525.9 Da PI: 8.5795 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
GAY45744.1 14 RGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
89******************************99************97 PP
| |||||||
| 2 | Myb_DNA-binding | 53.6 | 5.2e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
GAY45744.1 67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
7999******************.*********.************996 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 280 aa Download sequence |
MGRAPCCSKV GLQRGPWTPR EDTLLTEYIQ VHGEGHWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLRVQG 120 TDPNTHKKLS EPSLVQDGII KKRRRISKTE AEAAAAAASP VEPTGKHKLH LPKPIRVTTT 180 YLLPRNESFA RTTFSQGGEG VLAAHVLEEV PSYSLKDGDD GAAGFLVADH HLVNGSDFEC 240 QSQIFPGENS LEKLYEEYLQ ILKNDDEQLQ LDCFAESLLK |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 141 | 168 | KKRRRISKTEAEAAAAAASPVEPTGKHK |
| 2 | 142 | 169 | KKRRRISKTEAEAAAAAASPVEPTGKHK |
| 3 | 142 | 146 | KRRRI |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22640.1 | 8e-70 | MYB family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|