PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45779.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 28729 Da PI: 4.6953

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.9e-19	32	86	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k GAY45779.1 32 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 56779*************************************************9 PP
2	HD-ZIP_I/II	117.9	5.6e-38	33	124	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L++++++l+++ e+L+ke+++L +l++ GAY45779.1 33 NKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQK 124 79************************************************************************************999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MLDGGEYSPA AEPYSCMNEI TTTTTTRKKK CKNKRRFSDE QIRSLELMFE NETRLEPRKK 60 LQLAKELGLQ PRQVAIWFQN KRARWKSKQL ERDYNILQAN FNNLASRFEA LKKEKQALVI 120 QLQKTNELLQ NKPRREDQSP SERQCCGQVE GVNSMESELD NGDRDTNKCE SEVKPSLSAE 180 LRLGVLSDDD SSIKTEYFGL HEDEPNLMTM VEPAESSMTS PEDWGNFESD GLFDQSSSEY 240 QWWDFWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-78	HD-ZIP family protein