PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY45956.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 142aa    MW: 15955.3 Da    PI: 10.4581
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY45956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25.3e-291059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsst klyeyss
  GAY45956.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTSKLYEYSS 59
                8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TSKLYEYSSS  60
RMTSVIERYN KLKQENQQLL NPAAEVTMLN QRGRIVIHPK SKGRGAIFIG STRKSGLASN  120
EHNDPGEVEA MAYAFWGYDD LT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.16e-37MIKC_MADS family protein