PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY46199.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 289aa    MW: 31898.3 Da    PI: 8.2726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY46199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001225246323
                 ETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                 Cp Cg +Fs+  +L  H  + H
  GAY46199.1 225 CPQCGARFSSVTTLIEHVEKiH 246
                 *****************99888 PP
2zf-C2H213.80.00018261283223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F ++  L+ H  + H
  GAY46199.1 261 VCPKCSQGFCDPVALVEHVERdH 283
                 7*****************99888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGTPQFPDLG KHCSLPDCKQ IDFLPFTCDC CHKVFCLDHR SYNQHQCPKA ERHDVTVVIC  60
PLCAKGVRLR PDENPHITWE NHVNVDCDPS NYDKVTKKRK CPVRGCKEIL VFSNTIKCRD  120
CTVDHCLKHR FAPDHSCPGP KKLDTGFAFM SLLNRSRKEE PKPKQSPATS STKWTSSFLN  180
AASSFRASAE AGMSKLSNEI SQKLQIAKDG AGQSSSSGTG GTELCPQCGA RFSSVTTLIE  240
HVEKIHDRSG NQARPKVTVD VCPKCSQGFC DPVALVEHVE RDHGGTSRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-125C2H2 family protein