PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46249.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 365aa MW: 39972.3 Da PI: 6.2832

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46249.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.5	1.8e-05	18	59	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + +C+ + +lC C + H H++ GAY46249.1 18 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVAnrvafrHER 59 79****99****************99944456666765 PP
2	zf-B_box	32.1	2.3e-10	61	105	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC+ C e+H+ H++vp+ GAY46249.1 61 FVCESCEQAPAAFLCKADAASLCAACDAEIHSAnplarrHQRVPI 105 68***************************668999999997 PP
3	CCT	70.4	4.4e-24	296	339	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ GAY46249.1 296 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 339 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MMKEESNDGS GGGNSWARVC DTCRAAACTV YCKADMAYLC SACDSRVHVA NRVAFRHERV 60 FVCESCEQAP AAFLCKADAA SLCAACDAEI HSANPLARRH QRVPILPISG SVYGGRTGAT 120 PEGDHEDDQD EEEAASWLLL SNPGKNCGNG NNGNNNGFLF GGEVDEYLDL VDYTGGNQYL 180 DQYSNGNNNQ QQHGVAQKGY VGDSVVPVQC ELANKDHHRH QQNFQLGLDY DSSKAGYSYN 240 GSISHSVSVS STDLGVVPES TMSDISISHS RPPKGTIDLF SGPPIQMPPQ LTPMDREARV 300 LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD AEVEVDQMFS ATLMTDPGYG 360 IVPSF

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MMKEESNDGS GGGNSWARVC DTCRAAACTV YCKADMAYLC SACDSRVHVA NRVAFRHERV  60
FVCESCEQAP AAFLCKADAA SLCAACDAEI HSANPLARRH QRVPILPISG SVYGGRTGAT  120
PEGDHEDDQD EEEAASWLLL SNPGKNCGNG NNGNNNGFLF GGEVDEYLDL VDYTGGNQYL  180
DQYSNGNNNQ QQHGVAQKGY VGDSVVPVQC ELANKDHHRH QQNFQLGLDY DSSKAGYSYN  240
GSISHSVSVS STDLGVVPES TMSDISISHS RPPKGTIDLF SGPPIQMPPQ LTPMDREARV  300
LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD AEVEVDQMFS ATLMTDPGYG  360
IVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-104	CO-like family protein