PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46293.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 27194.1 Da PI: 9.5766

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.8	9.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gklyeys+ GAY46293.1 9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 59 79***********************************************96 PP
2	K-box	65.3	2.2e-22	78	172	4	97
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek.elqeenkaLrkk 97 ++ + ++++ + ++ e+ +Lk++ie L++++R+++G dLe+Lsl+eLq Leqq+++slk+ R++K++ l +q + l kk + +l+e++++L+++ GAY46293.1 78 QQLVTNDAELQGCWSLEYPNLKSRIEVLEKNIRNFMGGDLEPLSLRELQYLEQQIDTSLKRLRNRKERALQDQNNMLAKKAQlQLKEKERTLTEQ 172 4555556666789***************************************************************9999884677777777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRGRVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTE 60 SSMERILERY ERNAYVEQQL VTNDAELQGC WSLEYPNLKS RIEVLEKNIR NFMGGDLEPL 120 SLRELQYLEQ QIDTSLKRLR NRKERALQDQ NNMLAKKAQL QLKEKERTLT EQQNQMAQNS 180 SPLMPTFPSL TIGGNIQVMM RGSVIDEPDE NQTRQNMRST VVPWWMHDHV NHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	6e-72	MIKC_MADS family protein