PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY46399.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 249aa    MW: 28283.3 Da    PI: 7.221
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY46399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601171.1e-36241231100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCa+Ck++rrkC+k+C la+yfpa+qpk+f+nvh+l+G+s vlk+l++++++++++ams++++e+++ra+ Pv+G++g+ ++l++ql+ + +el l+++
  GAY46399.1  24 ACAVCKYQRRKCEKNCKLAKYFPANQPKTFQNVHRLYGVSSVLKILDSVDDDKKDIAMSTVIFESNMRAEYPVHGCFGLTFRLHHQLQASMEELRLVNA 122
                 7**********************************************************************************************9998 PP

      DUF260 100 e 100
                 +
  GAY46399.1 123 Q 123
                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
KLFFILCLVP SLIKMTIKGG TKQACAVCKY QRRKCEKNCK LAKYFPANQP KTFQNVHRLY  60
GVSSVLKILD SVDDDKKDIA MSTVIFESNM RAEYPVHGCF GLTFRLHHQL QASMEELRLV  120
NAQLAGNDFC VEIDDDVKPF IKIEQNPNYY SYMFNNMPLD IQSPSSSHGI PIPLQELECI  180
NSIHDDRVMA FDHTIPDHDR NPYLEPKAKE VSDASSSNTE SKDSKFPELV TNNKHKSGAS  240
SSKMLQFDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-41LBD family protein