PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46482.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 694aa MW: 76001.5 Da PI: 6.7126

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75	8.6e-24	127	228	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ l GAY46482.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDL 221 89**************************986445444..8999*****************************************..4488999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ GAY46482.1 222 CVGIRRA 228 **997 PP
2	Auxin_resp	120.2	1.6e-39	289	372	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eFvvk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ GAY46482.1 289 AAALAANGQPFEVVYYPRASTPEFVVKASAVRAAMQIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 372 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MITVMDSAKD AMKKNPTGES CLDSQLWHAC AGGMVQMPQI NSKVFYFPQG HLEHAKGNVE 60 LPNFNIPSMI PCRVTAIKFM ADAETDEVYA RIRLIALKSN GFDDFEDVGF DGNGGIGNES 120 SEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA EPPVQTILAK DVHGEVWKFR 180 HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKK GGIGGGSDYS 240 VGWNSGGGNC GFPFGGYSGY MREDENKSSR RNSSSDLRGR VRAESVTEAA ALAANGQPFE 300 VVYYPRASTP EFVVKASAVR AAMQIQWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP 360 IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNIPA IHLSPFSPAR KKLRLPEHSD 420 FSLINQLPTP SFTRNPLVTS SPFCCISDNI PAGIQGARHA QYGLSSSDLH FNKLQSSLFP 480 LGFQQLEHTT RPARVSSANF MSETGNSKNI SCLLTMGNPT QSFKDNIEVK TPHIILFGQL 540 ILPQQNSSQS CSGDTIVNSL SDGNPEKTAI SSDGSGSAVH QNGPLENSSD EGSPWCKDHK 600 KSDLGLEMGH CKVFMESEDV GRTLDLSVLG SYEELYGKLA NMFGIESAEM FSNVLYRDAA 660 GSVKHTGDEP FSEFLKTARR LTILTDSGSD SVGR

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MITVMDSAKD AMKKNPTGES CLDSQLWHAC AGGMVQMPQI NSKVFYFPQG HLEHAKGNVE  60
LPNFNIPSMI PCRVTAIKFM ADAETDEVYA RIRLIALKSN GFDDFEDVGF DGNGGIGNES  120
SEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA EPPVQTILAK DVHGEVWKFR  180
HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKK GGIGGGSDYS  240
VGWNSGGGNC GFPFGGYSGY MREDENKSSR RNSSSDLRGR VRAESVTEAA ALAANGQPFE  300
VVYYPRASTP EFVVKASAVR AAMQIQWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP  360
IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNIPA IHLSPFSPAR KKLRLPEHSD  420
FSLINQLPTP SFTRNPLVTS SPFCCISDNI PAGIQGARHA QYGLSSSDLH FNKLQSSLFP  480
LGFQQLEHTT RPARVSSANF MSETGNSKNI SCLLTMGNPT QSFKDNIEVK TPHIILFGQL  540
ILPQQNSSQS CSGDTIVNSL SDGNPEKTAI SSDGSGSAVH QNGPLENSSD EGSPWCKDHK  600
KSDLGLEMGH CKVFMESEDV GRTLDLSVLG SYEELYGKLA NMFGIESAEM FSNVLYRDAA  660
GSVKHTGDEP FSEFLKTARR LTILTDSGSD SVGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein