PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46681.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

E2F/DP

Protein Properties

Length: 375aa MW: 42279.6 Da PI: 9.2344

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	71.5	9.3e-23	24	89	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll++kflkl+++ + + l+++a++L v +rRRiYD++N+Le+++++++++kn ++w+g GAY46681.1 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRL---GV--ERRRIYDVVNILESIGVVARQAKNLYSWQG 89 79***************999********.....****************************98 PP
2	E2F_TDP	74.4	1.2e-23	148	227	2	71
E2F_TDP 2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 +eksL+lltq+f+kl+ +s+ +++tl+++a +L+ + +++k RR+YDi+NV++++nliek ++k+++rw g GAY46681.1 148 REKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDsnnstAMRTKIRRLYDIANVFSSMNLIEKthhpeSRKPAFRWLG 227 79*************************************9*******************9999999****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSSSSSSAFG FREAEPDGKQ FYSRKEKSLG LLCSKFLKLY NRDGVESIGL DDAASRLGVE 60 RRRIYDVVNI LESIGVVARQ AKNLYSWQGF DAIPEALEVL KEEGLRENFN INGCTNSGNV 120 LNDNENEGST CTVTDGQDSS SSKIESKREK SLWLLTQNFV KLFLCSDVDM ITLDSAAMAL 180 LGDSNNSTAM RTKIRRLYDI ANVFSSMNLI EKTHHPESRK PAFRWLGWKG KPCNRSAGFL 240 DLNEPKKRVF GTDITNLRLK KNKVDSLTEK KSNPKLNVPK YFKHCNEESN PDESRLEQHS 300 KHKSKGFVYG PFTPASISGI HDSRSKNTKQ VLDFASLAST FRPKYHNEAV NGLFGHYVEA 360 WKSWYAEVGD KEQKT

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSSSSSSAFG FREAEPDGKQ FYSRKEKSLG LLCSKFLKLY NRDGVESIGL DDAASRLGVE  60
RRRIYDVVNI LESIGVVARQ AKNLYSWQGF DAIPEALEVL KEEGLRENFN INGCTNSGNV  120
LNDNENEGST CTVTDGQDSS SSKIESKREK SLWLLTQNFV KLFLCSDVDM ITLDSAAMAL  180
LGDSNNSTAM RTKIRRLYDI ANVFSSMNLI EKTHHPESRK PAFRWLGWKG KPCNRSAGFL  240
DLNEPKKRVF GTDITNLRLK KNKVDSLTEK KSNPKLNVPK YFKHCNEESN PDESRLEQHS  300
KHKSKGFVYG PFTPASISGI HDSRSKNTKQ VLDFASLAST FRPKYHNEAV NGLFGHYVEA  360
WKSWYAEVGD KEQKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01330.1	1e-124	E2F/DP family protein