PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46825.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 162aa MW: 18104.2 Da PI: 5.688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140	7.7e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrrkC +dCv+apyfp e+p+kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ el+++++ GAY46825.1 10 PCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNA 108 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MASSSYSNAP CAACKCLRRK CMPDCVFAPY FPPEEPQKFV NVHKIFGASN VSKLLNEVLP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVMRLQ RELDATNADL IRYACNEMPP 120 QFGARSDTNE QNSGFYFPSQ WNNNNDGSHE GGESSSIIYR DT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-69	LBD family protein