PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY46917.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 28174 Da    PI: 7.7618
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY46917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien + rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgkl  y++
  GAY46917.1  9 KRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
                79***********************************************96 PP
2K-box74.52.9e-25831701299
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    e+  +ela L+ke++ Lq + R++ GedL+s+ + +L qLe++Le+s++k+R++Knell +q+++l++ke++l+een ++ + ++
  GAY46917.1  83 DSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQ 170
                 45677889************************************************************************99987766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGKIAIKR IENPTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKLCQYCTE  60
PFRMEQIIER RLKVTGTRIP EHDSREQIFN ELAVLRKETR RLQLSMRRYT GEDLGSIPYD  120
DLDQLEHELE SSVNKVRDRK NELLQQQLDN LRRKERMLEE ENSNMYRWIQ EHRAALEYQQ  180
AAMEAKPAEE HHHQVLDHFP FLGDQQPSSV LQLATNSIPH QIHPYHHLQL AQPNLQDPNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-92MIKC_MADS family protein