PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47038.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 296aa MW: 33049.7 Da PI: 6.9345

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.4e-06	117	136	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ GAY47038.1 117 FSCPVCNKTFNRYNNMQMHM 136 89*****************9 PP
2	zf-C2H2	13.9	0.00016	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ GAY47038.1 202 FGCRKCGKPFAVRGDWRTHEKNC 224 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MQTPAPFAYI SSSEGACFEA ADEQHQDEDS IVLSLGPPGQ RVSKNSTSNQ LLAHNNNHQN 60 PTSHHSGVTV ALHIGPPTAE AAGSTSNPTP NDIVNKLVEG QYWIPSPEQI LVGPTQFSCP 120 VCNKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKAVSSML RLPCYCCAEG CKNNIGHPRS 180 RPLKDFRTLQ THYKRKHGAK PFGCRKCGKP FAVRGDWRTH EKNCGKLWFC ICGSDFKHKR 240 SLKDHVRSFG DGHAPHTVEF GREVEEDEDE DNDFDEEEDE VDGGDINGSV LSFKYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-123	C2H2 family protein