PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47135.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 687aa MW: 75661.7 Da PI: 7.3092

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.1e-06	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ G C++Gd C +aHg GAY47135.1 274 PCPDHRK-GACSRGDMCEYAHG 294 7****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MQEAKQKLFF QNYLIMCGGS EKLSSKALAP SASPPSKPSL QRNMIGLWYS FQRLSKKIVL 60 QHRTPLMVAA EYGSVDVVKL ILSLTKADVN LTCGLDKSTA LHCAASGGSV NAVDVVKLLL 120 FAGADSNLTD AHGNRPFDVI VVHPNVPDSR VSLEDLLKNG GSVSFDELQV SSVDLRSSSS 180 LSSSSDDSSL SSLTCKSDDV HAFVAPEKKE YPIDPSLPDI KDSIYASDEF RMYSFKIRPC 240 SRAYSHDWTE CPFAHPGENA RRRDPRKFHY SCMPCPDHRK GACSRGDMCE YAHGIFESWL 300 HPAQYRTKLC KDGTSCMRRV CFFAHALDEL RPLYASTGSG MPSPQSATAM NMLPGSPSAV 360 SAMLPSPFTP PMSPSNDILC LSMAWPQQNI PTLHLPSSNL QASRLRSSLN ARDIPVEDLG 420 MLRDFEMQNQ LINEFSHSQP QFGTSSGGNM SVRLNRLTPT KLDQLSYPEI SSPQYSDQFA 480 ASNVFSPSHK SMVLNQLQQQ QQNMSSPINT NVFSPMNVDH PLLQASFGIS SPGRMSPRKM 540 EPISPMSPRV STLTPREKLL QQLHSLSLRE HGPRLSCDLK SDSPIGSVLN SWSKLESPSM 600 KIDWSIQADE LNHLRRSHSF GRNGEGLDVS TVQSHMRETP SKMKETTPAP PSSMSFPTEG 660 ANLNPQSESG DHLGAWLDQL QLDQIVA

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MQEAKQKLFF QNYLIMCGGS EKLSSKALAP SASPPSKPSL QRNMIGLWYS FQRLSKKIVL  60
QHRTPLMVAA EYGSVDVVKL ILSLTKADVN LTCGLDKSTA LHCAASGGSV NAVDVVKLLL  120
FAGADSNLTD AHGNRPFDVI VVHPNVPDSR VSLEDLLKNG GSVSFDELQV SSVDLRSSSS  180
LSSSSDDSSL SSLTCKSDDV HAFVAPEKKE YPIDPSLPDI KDSIYASDEF RMYSFKIRPC  240
SRAYSHDWTE CPFAHPGENA RRRDPRKFHY SCMPCPDHRK GACSRGDMCE YAHGIFESWL  300
HPAQYRTKLC KDGTSCMRRV CFFAHALDEL RPLYASTGSG MPSPQSATAM NMLPGSPSAV  360
SAMLPSPFTP PMSPSNDILC LSMAWPQQNI PTLHLPSSNL QASRLRSSLN ARDIPVEDLG  420
MLRDFEMQNQ LINEFSHSQP QFGTSSGGNM SVRLNRLTPT KLDQLSYPEI SSPQYSDQFA  480
ASNVFSPSHK SMVLNQLQQQ QQNMSSPINT NVFSPMNVDH PLLQASFGIS SPGRMSPRKM  540
EPISPMSPRV STLTPREKLL QQLHSLSLRE HGPRLSCDLK SDSPIGSVLN SWSKLESPSM  600
KIDWSIQADE LNHLRRSHSF GRNGEGLDVS TVQSHMRETP SKMKETTPAP PSSMSFPTEG  660
ANLNPQSESG DHLGAWLDQL QLDQIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein