PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47136.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 712aa MW: 78153.2 Da PI: 6.7553

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.2e-06	299	319	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ G C++Gd C +aHg GAY47136.1 299 PCPDHRK-GACSRGDMCEYAHG 319 7****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MCGGSEKLSS KALAPSASPP SKPSLQRNMS NPTETMKSDH SFSRLLELAA DNDVEGFKQC 60 ICDTSAICEV GLWYSFQRLS KKIVLQHRTP LMVAAEYGSV DVVKLILSLT KADVNLTCGL 120 DKSTALHCAA SGGSVNAVDV VKLLLFAGAD SNLTDAHGNR PFDVIVVHPN VPDSRVSLED 180 LLKNGGSVSF DELQVSSVDL RSSSSLSSSS DDSSLSSLTC KSDDVHAFVA PEKKEYPIDP 240 SLPDIKDSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFAH PGENARRRDP RKFHYSCMPC 300 PDHRKGACSR GDMCEYAHGI FESWLHPAQY RTKLCKDGTS CMRRVCFFAH ALDELRPLYA 360 STGSGMPSPQ SATAMNMLPG SPSAVSAMLP SPFTPPMSPS NDILCLSMAW PQQNIPTLHL 420 PSSNLQASRL RSSLNARDIP VEDLGMLRDF EMQNQLINEF SHSQPQFGTS SGGNMSVRLN 480 RLTPTKLDQL SYPEISSPQY SDQFAASNVF SPSHKSMVLN QLQQQQQNMS SPINTNVFSP 540 MNVDHPLLQA SFGISSPGRM SPRKMEPISP MSPRVSTLTP REKLLQQLHS LSLREHGPRL 600 SCDLKSDSPI GSVLNSWSKL ESPSMKIDWS IQADELNHLR RSHSFGRNGE GLDVSTVQSH 660 MRETPSKMKE TTPAPPSSMS FPTEGANLNP QSESGDHLGA WLDQLQLDQI VA

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MCGGSEKLSS KALAPSASPP SKPSLQRNMS NPTETMKSDH SFSRLLELAA DNDVEGFKQC  60
ICDTSAICEV GLWYSFQRLS KKIVLQHRTP LMVAAEYGSV DVVKLILSLT KADVNLTCGL  120
DKSTALHCAA SGGSVNAVDV VKLLLFAGAD SNLTDAHGNR PFDVIVVHPN VPDSRVSLED  180
LLKNGGSVSF DELQVSSVDL RSSSSLSSSS DDSSLSSLTC KSDDVHAFVA PEKKEYPIDP  240
SLPDIKDSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFAH PGENARRRDP RKFHYSCMPC  300
PDHRKGACSR GDMCEYAHGI FESWLHPAQY RTKLCKDGTS CMRRVCFFAH ALDELRPLYA  360
STGSGMPSPQ SATAMNMLPG SPSAVSAMLP SPFTPPMSPS NDILCLSMAW PQQNIPTLHL  420
PSSNLQASRL RSSLNARDIP VEDLGMLRDF EMQNQLINEF SHSQPQFGTS SGGNMSVRLN  480
RLTPTKLDQL SYPEISSPQY SDQFAASNVF SPSHKSMVLN QLQQQQQNMS SPINTNVFSP  540
MNVDHPLLQA SFGISSPGRM SPRKMEPISP MSPRVSTLTP REKLLQQLHS LSLREHGPRL  600
SCDLKSDSPI GSVLNSWSKL ESPSMKIDWS IQADELNHLR RSHSFGRNGE GLDVSTVQSH  660
MRETPSKMKE TTPAPPSSMS FPTEGANLNP QSESGDHLGA WLDQLQLDQI VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein