PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47208.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 552aa MW: 60948.7 Da PI: 6.5706

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.6	2.3e-11	169	225	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g GAY47208.1 169 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 225 57*****************5444.2455536655.779999************98 PP
2	AP2	39.1	1.9e-12	270	323	3	55
AP2 3 ykGV....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g GAY47208.1 270 YRGVtrssSRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 323 8999988889999*****988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MNTNNWLSFP LSPTHASLPA QLHTSQSHQF NLGLVNDGMD NPFQGQEWNL INTHGSGEVP 60 KVADFLGVSK SDNQSDLVDF NEIQANDQSD YLFQNNSIVP VQNTIVAAST GTYEFQENTN 120 NLQSLTLSMG SGNNKGSSST CETSGENSTS IVEAAAPRRT LDTFGQRTSI YRGVTRHRWT 180 GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPIGNYEKE 240 LEEMKHMTRQ EFVASIRRKS SGFSRGASMY RGVTRSSSRH HQHGRWQARI GRVAGNKDLY 300 LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKAI LESNTLPIGG GAAKRLKEAQ 360 ALETSRRREE MIALGSSFQY GSSSSSRLQA YPLMQTTPFE QPQPPLLNLQ NQEISQYTQD 420 PSFHQSYIQT QLQLHHQQQS AGSNYLQQSS QNSHFYNTYL QNNPGLLHGL VNMGSNSSSV 480 IDNNGSSSGS YSTGGYIGNG GIGMTLNSST GTAAEELGMV KVDYDMPSGG YTNWSGDSVQ 540 GTNAGFFTMW ND

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MNTNNWLSFP LSPTHASLPA QLHTSQSHQF NLGLVNDGMD NPFQGQEWNL INTHGSGEVP  60
KVADFLGVSK SDNQSDLVDF NEIQANDQSD YLFQNNSIVP VQNTIVAAST GTYEFQENTN  120
NLQSLTLSMG SGNNKGSSST CETSGENSTS IVEAAAPRRT LDTFGQRTSI YRGVTRHRWT  180
GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPIGNYEKE  240
LEEMKHMTRQ EFVASIRRKS SGFSRGASMY RGVTRSSSRH HQHGRWQARI GRVAGNKDLY  300
LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKAI LESNTLPIGG GAAKRLKEAQ  360
ALETSRRREE MIALGSSFQY GSSSSSRLQA YPLMQTTPFE QPQPPLLNLQ NQEISQYTQD  420
PSFHQSYIQT QLQLHHQQQS AGSNYLQQSS QNSHFYNTYL QNNPGLLHGL VNMGSNSSSV  480
IDNNGSSSGS YSTGGYIGNG GIGMTLNSST GTAAEELGMV KVDYDMPSGG YTNWSGDSVQ  540
GTNAGFFTMW ND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein